Type: Package
Package: Rsearch
Title: Processing and Analyzing Amplicon Sequence Data
Version: 1.2.0
Authors@R: c(
    person("Cassandra", "Stamsaas", , "cassandra.stamsaas@nmbu.no", role = c("cre", "aut")),
    person("Lars", "Snipen", , "lars.snipen@nmbu.no", role = "aut"),
    person("Torbjørn", "Rognes", , "torognes@ifi.uio.no", role = "aut"),
    person("Hilde", "Vinje", , "hilde.vinje@nmbu.no", role = "aut")
  )
Maintainer: Cassandra Stamsaas <cassandra.stamsaas@nmbu.no>
Description: Processing and analysis of amplicon sequencing data, with
        a primary focus on eDNA metabarcoding while remaining
        applicable to general targeted sequencing workflows. The
        package provides a user-friendly interface for core 'VSEARCH'
        (Rognes et al. (2016), <doi:10.7717/peerj.2584>) functions,
        extended with dedicated tools for visualization and parameter
        tuning.
License: GPL (>= 3)
URL: https://cassandrahjo.github.io/Rsearch/,
        https://github.com/CassandraHjo/Rsearch/
BugReports: https://github.com/CassandraHjo/Rsearch/issues/
Depends: R (>= 4.1)
Imports: ape (>= 5.8.1), cowplot (>= 1.1.3), dplyr, ggExtra (>=
        0.10.1), ggplot2 (>= 3.5.1), microseq (>= 2.1.6), RColorBrewer
        (>= 1.1.3), readr (>= 2.1.5), stats, stringr (>= 1.5.1), tibble
        (>= 3.2.1), tidyr (>= 1.3.1), tidyselect (>= 1.2.1)
Suggests: phyloseq, rmarkdown, testthat (>= 3.0.0), withr (>= 3.0.2)
Config/Needs/website: rmarkdown
Config/roxygen2/version: 8.1.1
Config/testthat/edition: 3
Encoding: UTF-8
Repository: https://cassandrahjo.r-universe.dev
Date/Publication: 2026-10-29 08:59:04 UTC
RemoteUrl: https://github.com/cassandrahjo/rsearch
RemoteRef: HEAD
RemoteSha: fc3761b028a38d7c2cffefec233ff3137fb6c83a
NeedsCompilation: no
Packaged: 2026-10-29 10:51:51 UTC; root
Author: Cassandra Stamsaas [cre, aut],
  Lars Snipen [aut],
  Torbjørn Rognes [aut],
  Hilde Vinje [aut]